Rational planning of a drug candidate: in silico studies, synthesis and structural elucidation

Authors

DOI:

https://doi.org/10.33448/rsd-v9i11.10605

Keywords:

Drugs; In silico methods; Carbohydrates.

Abstract

Technology has been essential in the drug planning process, since it allows the optimization of time and operational costs, however, even with all this technology, the search for drugs is an arduous and highly complex process. Medicinal chemistry is the area that reconciles numerous other areas during the drug development process. Faced with this, a class of molecules that has been attracting the scientific community are carbohydrates, molecules with numerous pharmacological and biological activities. Thus, the objective of this work was to outline the molecular architecture of a drug candidate, evaluate its pharmacokinetic, pharmacodynamic and toxicological properties with the aid of in silico tools, then synthesize it and elucidate its molecular architecture. After the evaluations, it was found that the candidate deserved his synthesis, done after three reaction steps, in the form of a white amorphous solid, in excellent yield (87%). In short, in silico methods pointed out that the target candidate had a low probability of presenting toxic effects, good characteristics to become a good drug, an excellent potential for oral bioavailability and a marked activity related to enzyme inhibition.

References

Agirre, J., Davies, G., Wilson, K. S., Cowtan, K. D. (2017). Carbohydrate structure: the rocky road to automation. Current Opinion in Structural Biology, 47 (1) 39-47.

Almeida, C. L. A. (2015). Planejamento sintético e avaliação antitumoral de carboidratos enônicos. Monografia (Licenciatura em Química). Centro de Educação e Saúde - Universidade Federal de Campina Grande, Cuité-PB.

Araujo, C. R. M., Santos, V. L. A., Gonsalves, A. A. (2016). Acetilcolinesterase - AChE: uma enzima de interesse farmacológico. Revista Virtual de Química, 8 (6), 1818-1834.

Banerjee, P., Eckert, A. O., Schrey, A. K., Preissner, R. (2018). ProTox-II: a webserver for the prediction of toxicity of chemicals. Nucleic Acids Research, 46 (1), 257-263.

Barros, M. E. S. B. (2015). Estudos de docking molecular e atividade biológica de análogos de (-)- massoialactona e da combretastatina A-4. Tese (Doutorado em Química) – Departamento de Química Fundamental, Universidade Federal de Pernambuco, Recife-PE.

Brito, M. A. (2010). Avaliação de propriedades farmacológicas de fármacos in silico no curso experimental de química medicinal. Revista Eletrônica de Farmácia, 17 (4), 22-29.

Delbianco, M., Bharate, P., Varela-Aramburu, S., Seeberger, P. H. (2016). Carbohydrates in Supramolecular Chemistry. Chemical Review, 116 (4), 1693.

Figueredo, A. S. (2018). Síntese e avaliação biológica de glycoclusters com potencial aplicação para o tratamento de diabetes e doença de Chagas. Tese (Doutorado) - Faculdade de Ciências Farmacêuticas de Ribeirão Preto, Universidade de São Paulo, Ribeirão Preto-SP.

Leodido, A. C. M., Alvarenga, E. M., Araujo, T. S. L., Sousa, N. A., Souza, L. K. M., Costa, D. S., Souza, F. M. (2017). Prospecção tecnológica de polissacarídeos com atividade antidiarreica. Revista Gestão, Inovação e Tecnologias, 7 (1), 3655-3668.

Lipinski, C. A (2016). Ruleoffive in 2015 andbeyond: Target andligandstructurallimitations, ligand chemistry structure and drug discovery project decisions. Elsevier, 101 (1), 8.

Lipinski, C. A., Lombardo, F., Dominy, B. W., Feeney, P. J. (1997). Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings. Advanced Drug Delivery Reviews, 23 (3), 4-25.

Mafud, A. C., Ferreira, L. G., Mascarenhas, Y. P., Andricopulo, A. D., Moraes, J. (2016). Discovery of novel antischistosomal agentes by molecular modeling approaches. Trends in Parasitology, 32 (11), 874-886.

Molinspiration (2018). Molinspiration Molecule Viewer: Chem informatics on the Web. 2018. Obtido em http://www.molinspiration.com.

Moura, A. L., Lima, L. M. A., Bezerra, G. B., De Freitas, J. J. R., Belain, M. F., Ramos, C. S., Avelino, R. A., Freitas Filho, J. R. (2018). O-Glicosídeos 2,3-insaturados: aplicações, rearranjo de ferrier e reações. Química Nova, 41(5), 550-566.

Nigudkar, S. S., & Demchenko, A. V. (2015). Stereocontrolled 1,2-cis glycosylation as the driving force of progress in synthetic carbohydrate chemistry. Chemical Science, 6 (1), 2687-2704.

Organic Chemistry Portal (2018). Molecular Property Explorer – Drugscore. Obido em https://www.organic-chemistry.org/prog/peo/drugScore.html.

Pereira, A. S., Shitsuka, D. M., Parreira, F. J., Shitsuka R. (2018). Metodologia da pesquisa científica. [e-book]. Santa Maria. Ed. UAB/NTE/UFSM. Recuperado de https://repositorio.ufsm.br/bitstream/handle/1/15824/Lic_Computacao_Metodologia-Pesquisa-Cientifica.pdf?sequence=1.

Rodrigues, L. M. S. (2019). Estudos de Docking molecular de derivados tiazóis com a BSA e como potenciais intercaladores de DNA e inibidores da topoisomerase II. Monografia (Licenciatura em Química) – Universidade Federal Rural de Pernambuco, Unidade Acadêmica de Serra Talhada, Serra Talhada-PE.

Santos, J. A. M., Santo, C. S., Almeida, C. L. A., Silva, T. D. S., Filho, J. R. F., Militao, G. C. G., Silva, T. G., Cruz, C. H. B., Freitas, J. C. R., Menezes, P. H. (2017a). Structure-based design, synthesis and antitumoral evaluation of enulosides. European Journal of Medicinal Chemistry, 128 (1), 192-201.

Silva, V. S. (2015). Avaliação in silico de novos compostos bioativos para o tratamento da síndrome de imunodeficiência adquirida humana (AIDS): Potenciais inibidores da transcriptase reversa (tr) do HIV-1. Dissertação (Mestrado em Ciências) – Instituto Oswaldo Cruz, Fundação Oswaldo Cruz, Rio de Janeiro-RJ.

Singh, S., Gupta, A. K., Verma, A. (2013). Molecular properties and bioactivity score of Aloe vera antioxidant compounds-in order to lead finding. Research Journal of Pharmaceutical, Biological and Chemical Sciences, 4 (2), 876-881.

Soares, S. B., Muniz, S. D. B., Albuquerque, F. G. F., Malaquias, I. S., Leite, F. C. (2019). Avaliação de uso de antidepressivos em uma farmácia privada na cidade de Cajazeiras – pb. Journal of Biology & Pharmacy and Agricultural Management, 15 (3), 1-13.

Srinivas, N., Sandeep, K. S., Anusha, Y., Devendra, B. N. (2014). In vitro cytotoxic evaluation and detoxification of monocrotaline (Mct) alkaloid: an in silico approach. International Invention Journal Biochemistry Bioinformatics, 2 (3), 20-29.

Toropova, M. A. Drug metabolism as an object of computational analysis by the Monte Carlo method. Current Drug Metabolism, 18 (12), 1123-1131.

Toshima, K., Ishizuka, T., Matsuo, G., Nakata, M. (1995). Practical glycosidation method of glycals Montmorillonite K-10 as an environmentally acceptable and inexpensive industrial calayst. Chemical Review, 1995 (4), 306-308.

Ullah, A., Prottoy, N. I., Araf, Y., Hossain, S., Sarkar, B., Saha, A. (2019). Molecular Docking and pharmacological property analysis of phytochemicals from clitoria ternatea as potent inhibitors of cell cycle checkpoint proteins in the cyclin/cdk pathway in cancer cells. Scientific Research Publishing, 9 (3), 1-14.

Urso, O., Rayan, A., Goldblum, A., Oprea, T. I. (2011). Understanding drug-likness. Wiley Interdisciplinary Reviews, 1 (5), 760-781.

Wu, J., Kwon, B., Liu, W., Anslyn, E. V., Wang, P., Kim, J. S. (2015). Chromogenic/Fluorogenic Ensemble Chemosensing Systems. Chemical Reviews, 115 (15), 7893, 2015.

Published

03/12/2020

How to Cite

MEDEIROS, H. I. R. de; CAIANA, R. R. A.; FERNANDES, N. D.; MEDEIROS JÚNIOR , F. C. de .; SCOTTI, M. T.; SCOTTI, L.; FREITAS, J. C. R. de. Rational planning of a drug candidate: in silico studies, synthesis and structural elucidation. Research, Society and Development, [S. l.], v. 9, n. 11, p. e77391110605, 2020. DOI: 10.33448/rsd-v9i11.10605. Disponível em: https://www.rsdjournal.org/index.php/rsd/article/view/10605. Acesso em: 25 apr. 2024.

Issue

Section

Health Sciences